Just in time, I've finally made my list. Of course, I'm always discovering new music, so I reserve the right to repeatedly modify this over time.
<b><u>
2000</u></b>
1.

Linkin Park - <i>Hybrid Theory</i>
2.

Hanson - <i>This Time Around</i>
3.

Matchbox 20 - <i>Mad Season</i>
<b>Honorable Mention:</b> Christina Aguilera - <i>My Kind of Christmas</i>
<b><u>
2001</u></b>
1.

Michael Jackson - <i>Invincible</i>
2.

Ben Folds - <i>Rockin' the Suburbs</i>
3.

Aerosmith - <i>Just Push Play</i>
<b><u>
2002</u></b>
1.

Maroon 5 - <i>Songs About Jane</i>
2.

Eminem - <i>The Eminem Show</i>
3.

<i>Jason Mraz - Waiting for My Rocket to Come</i>
<b>Honorable Mentions:</b> Amy Grant - <i>Legacy... Hymns & Faith</i> <b>|</b> Ben Kweller - <i>Sha Sha</i> <b>|</b> Jars of Clay - <i>The Eleventh Hour</i>
<b><u>
2003</u></b>
1.

Amy Grant - <i>Simple Things</i>
2.

Jet - <i>Get Born</i>
3.

Linkin Park - <i>Meteora</i>
<b>Honorable Mentions</b>: Jars of Clay - <i>Who We Are Instead</i> <b>|</b> Weird Al Yankovic - <i>Poodle Hat</i> <b>|</b> <i>Wicked (2003 Original Broadway Cast Recording)</i>
<b><u>
2004</u></b>
1.

Aerosmith - <i>Honkin' on Bobo</i>
2.

Hanson - <i>Underneath</i>
3.

Franz Ferdinand - <i>Franz Ferdinand</i>
<b>Honorable Mentions:</b> Keane - <i>Hopes and Fears</i> <b>|</b> Amy Grant - <i>Greatest Hits | 1986-2004</i> <b>|</b> Kelly Clarkson - <i>Breakaway</i>
<b><u>
2005</u></b>
1.

David Gray - <i>Life in Slow Motion</i>
2.

Amy Grant - <i>Rock of Ages... Hymns & Faith</i>
3.

Michael Bublé - <i>It's Time</i>
<b>Honorable Mentions:</b> Panic! at the Disco - <i>A Fever You Can't Sweat Out</i> <b>|</b> Jason Mraz - <i>Mr. A-Z</i> <b>|</b> Jars of Clay - <i>Redemption Songs</i>
<b><u>
2006</u></b>
1.

Justin Timberlake - <i>FutureSex/LoveSounds</i>
2.

John Mayer - <i>Continuum</i>
3.

Christina Aguilera - <i>Back to Basics</i>
<b>Honorable Mentions:</b> Amy Grant - <i>Time Again... Amy Grant Live</i> <b>|</b> <i>Dreamgirls: Music from the Motion Picture</i> <b>|</b> Hellogoodbye - <i>Zombies! Aliens! Vampires! Dinosaurs!</i>
<b><u>
2007</u></b>
1.

Maroon 5 - <i>It Won't Be Soon Before Long</i>
2.

Hanson - <i>The Walk</i>
3.

Michael Bublé - <i>Call Me Irresponsible</i>
<b>Honorable Mentions:</b> Linkin Park - <i>Minutes to Midnight</i> <b>|</b> Amy Grant - <i>Greatest Hits</i> <b>|</b> <i>Hairspray: Soundtrack to the Motion Picture</i>
<b><u>
2008</u></b>
1.

Jason Mraz - <i>We Sing. We Dance. We Steal Things.</i>
2.

Panic! at the Disco - <i>Pretty. Odd.</i>
3.

Mariah Carey - <i>E=MC^2</i>
<b>Honorable Mentions:</b> Jennifer Hudson - <i>Jennifer Hudson</i> <b>|</b> Rihanna - <i>Good Girl Gone Bad</i> <b>|</b> Jonas Brothers - <i>A Little Bit Longer</i>
<b><u>
2009</u></b>

1. Michael Bublé - <i>Crazy Love</i>

2. David Archuleta - <i>Christmas from the Heart</i>

3. David Gray - <i>Draw the Line</i>
<b>Honorable Mentions:</b> Tinted Windows - <i>Tinted Windows</i> <b>|</b> Kelly Clarkson - <i>All I Ever Wanted</i> <b>|</b> Manchester Orchestra - <i>Mean Everything to Nothing</i>
-Aaron